DreEX6004751 @ danRer10
Exon Skipping
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21111160-21117596:+
Coord C1 exon
chr7:21111160-21111247
Coord A exon
chr7:21114483-21114685
Coord C2 exon
chr7:21117467-21117596
Length
203 bp
Sequences
Splice sites
3' ss Seq
CATTTAAATATGTTTTTCAGATA
3' ss Score
7.89
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
GCATTCTTCCCAAGGGTGGTCGCTTGACCAGATTAGCATATTTGCTCTGGTGGATTCCTTTATGCAGAGATGCAAAGATCTAATAGAG
Seq A exon
ATATGTGAGTGTCAGCAGCAGTTTGCTCGCTGGGAGGATGGTGAGCGAGTGCCTCTGCCGTGTTTCGCGGGACGTCTGGGGTCGGAGGTCACTCAGAAACTCCTGTACATCGAGGCAACCTTTGACAAAAGCCTGCAGGTCCTGCAGTCTGTTCAGGACATCCTGGATGTCCGAAATCCCTCTTGGCATGAGGACTACAGCAG
Seq C2 exon
GTTCCGTGCTAAATTGAAAGATCTGGAGGTGATGATGCAGAATTTGATCACTTCGACCTTCGAGATGGTGAATTGTGTGGAGGAAGGAGTGCAGCTGCTCGATGTGTTTCAGCACCTGTCTGGAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(5.1=100)
A:
PF083857=DHC_N1=FE(11.7=100)
C2:
PF083857=DHC_N1=FE(7.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCTTCCCAAGGGTGGTCG
R:
TCTCTTCCAGACAGGTGCTGA
Band lengths:
216-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]