BtaEX6086845 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28027092-28035443:+
Coord C1 exon
chr19:28027092-28027248
Coord A exon
chr19:28031906-28031967
Coord C2 exon
chr19:28035273-28035443
Length
62 bp
Sequences
Splice sites
3' ss Seq
TTTTTGAATTTTTTCCCCAGAGC
3' ss Score
9.62
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ATGTCCAGCAAAGCTGACAAAAAGCGGAAAGTGACTAGCCGGGGAAGTGCCCGCCGGCGAGCTGCCCAGTCTACTCTGGATGCACAGGTCGAGGAGATCACCTTGCCGGCCAGCAGCGAGGTCCAGGCGGAGCCGGAGACCGTCAAGGAGGAGCCTG
Seq A exon
AGCCAGTATTGGAACAACCTGAAATACAGAAAGAAGAATTAGAGGAGCGTGAGGTAGATGTG
Seq C2 exon
AAGCCCCTCTTCCTGTCCCGGGCTGTACTGACAGGACTGGCGGACGCCACATGGACAGAGGAGCACAGCACTGTTCTGGAACACTTTGCCCAGGACCCTTCGGAACCCATCCTCACCATCTTCATCGACCCTTGTATGGGGCTGAAGCTAGACCTGGGAATGCCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.714 C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCACAGGTCGAGGAGATCA
R:
CTGTGCTCCTCTGTCCATGTG
Band lengths:
146-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]