DreEX6004754 @ danRer10
Exon Skipping
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21060259-21065556:+
Coord C1 exon
chr7:21060259-21060437
Coord A exon
chr7:21062499-21062569
Coord C2 exon
chr7:21065386-21065556
Length
71 bp
Sequences
Splice sites
3' ss Seq
GTCTGTATGTGTTTTTTTAGCTG
3' ss Score
8.69
5' ss Seq
CTGGTAATT
5' ss Score
5.99
Exon sequences
Seq C1 exon
AGTGCGACCGCAGAGGTTTCAGTCCCTCAGGATGGCTGACCCAGAGACCCCCCAGCCTGCCCGTTCATCTTCCAGCATGTCCAAGCAGTCTGACTCAAGGAAAGGTCACTCCAAGAGCAAACGTATATCCTCCACACCGGCCCCAGATGACATGTCTCCACAAGCACCAGAGGTTGCAG
Seq A exon
CTGAAAGAGAGAAGTCTGTCTCAGAGGTGACTGTTGCAGTGGACGAAGTAGATTCCTACAAGAAACGGCTG
Seq C2 exon
AGAGAAGCATTTAAACAGCGTCTAGCATTGAGTGGTATATCAAAGGAGTCATGGACTGAGGAAAATGAGCAAGCCTTGGATAAATTCATCTCAGACTCTTCTGTCAGGCTCCTCGTAGTTTACCATGACCCTTTCACTGGCCTATACGTGGACTACGCCATGCCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.333 C2=0.035
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTATATCCTCCACACCGGC
R:
CGAGGAGCCTGACAGAAGAGT
Band lengths:
174-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]