RnoEX0028509 @ rn6
Exon Skipping
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56136110-56152140:-
Coord C1 exon
chr10:56151958-56152140
Coord A exon
chr10:56139393-56139448
Coord C2 exon
chr10:56136110-56136280
Length
56 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGACGTTCTCCTCAGAGC
3' ss Score
9.39
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
GTTTTGCCTTCAAGATGGCAAGCAAAGCGGAGAAGAAGCGAAAAGTGGGTGGCCGGGGAGGCCCCCGGGCAGGCCGACCTGGCCGACCTCCTCAGTCCACTGTGGCCCCAGGAGTTGAGAAGGAGACTTCTCAGCTGCCTATCATTCCGGAGCCAGAGTACGAGCCCATGAAGGAGGAGTCTG
Seq A exon
AGCAAGATCTGGAGGAACCTGAAGAACCTAAAGAACCGGACCTTTCGACGGACGTG
Seq C2 exon
AAGCCCATCTTCCTCTCACGAGCTATGTTGACTGGACTGGCAGATTCGACATGGACGGCGGAGCATGATGCGGTTCTGGAACACTTTGCCCAGGATCCCTCGGTGCCTGTCCTCACCATCTTTGTTGACCCTGTCTTTGGGTTGAAGCTGGAGCTGGGTATGCCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688-'5-3,'5-2,6-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.947 C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTGCCTATCATTCCGGA
R:
TTCCAGAACCGCATCATGCTC
Band lengths:
134-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]