HsaEX6020705 @ hg38
Exon Skipping
Gene
ENSG00000183914 | DNAH2
Description
dynein axonemal heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr17:7719721-7727292:+
Coord C1 exon
chr17:7719721-7719900
Coord A exon
chr17:7723628-7723689
Coord C2 exon
chr17:7727122-7727292
Length
62 bp
Sequences
Splice sites
3' ss Seq
TGTATGTTTATTCTTCCTAGAGC
3' ss Score
7.07
5' ss Seq
GTGGTAGGC
5' ss Score
5.59
Exon sequences
Seq C1 exon
GTTTTGCCTGCACGATGTCCAGCAAAGCTGAGAAGAAGCAGCGATTGAGTGGCCGAGGAAGCTCCCAGGCAAGCTGGTCAGGGCGGGCCACTCGGGCTGCTGTGGCCACACAGGAGCAGGGGAATGCCCCGGCTGTCAGTGAGCCAGAGCTGCAGGCTGAGCTCCCCAAGGAGGAGCCTG
Seq A exon
AGCCACGGTTGGAGGGACCTCAAGCACAGAGTGAAGAATCAGTGGAGCCCGAGGCAGATGTG
Seq C2 exon
AAGCCCCTCTTCCTTTCCCGAGCTGCGCTGACAGGACTGGCGGATGCAGTGTGGACACAGGAGCATGATGCCATTCTGGAACACTTTGCCCAGGACCCTACAGAATCCATCCTCACCATCTTCATTGACCCTTGTTTTGGGCTGAAGCTAGAGCTGGGCATGCCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183914-'2-4,'2-2,4-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.857 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACAGGAGCAGGGGAATG
R:
CTCCTGTGTCCACACTGCATC
Band lengths:
137-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains