BtaEX6087135 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025337 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr19:29979524-29983276:-
Coord C1 exon
chr19:29983189-29983276
Coord A exon
chr19:29980817-29980934
Coord C2 exon
chr19:29979524-29979647
Length
118 bp
Sequences
Splice sites
3' ss Seq
CTGGGCTCCTCTCTCCCCAGGCG
3' ss Score
10.97
5' ss Seq
GCGGTAGGT
5' ss Score
9
Exon sequences
Seq C1 exon
GAAAATTTAAACAAATTGATGACCAATTTAAGGAGCACTCACCCTCACTTTGTGCGATGTCTGATTCCCAATGAGACTAAGACACCTG
Seq A exon
GCGTGATGGACCACCACCTGGTCCTGCACCAGCTGCGCTGTAACGGGGTCCTGGAGGGCATCCGCATCTGCAGGAAGGGCTTCCCCAGCCGGATCCTCTATGGCGACTTCAAACAGCG
Seq C2 exon
GTACCGGATCCTCAATGCCAGTGCCATCCCAGAGGGCCAGTTCATTGACAGCAAAAACGCTTCCGAGAAGCTTCTGAACTCCATCGACGTGGACCGGGAGCAGTATAGGTTCGGCCACACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025337-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(6.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGACCAATTTAAGGAGCACTCA
R:
TGGTGTGGCCGAACCTATACT
Band lengths:
194-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]