GgaEX0000755 @ galGal3
Exon Skipping
Gene
ENSGALG00000000779 | MYH13
Description
NA
Coordinates
chr18:320116-324113:-
Coord C1 exon
chr18:324026-324113
Coord A exon
chr18:321798-321915
Coord C2 exon
chr18:320116-320239
Length
118 bp
Sequences
Splice sites
3' ss Seq
ATATATGTATGTTTTTTAAGGTG
3' ss Score
8.58
5' ss Seq
ACGGTATGT
5' ss Score
9.94
Exon sequences
Seq C1 exon
GAAAATCTGAACAAGCTGATGACTAACCTGAGAAGTACACACCCTCATTTTGTGCGTTGCTTGATTCCAAATGAGACCAAGACACCAG
Seq A exon
GTGAAATGGACCATTACTTGGTGATGCATCAGCTGCGATGTAATGGGGTTCTAGAAGGCATCCGAATTTGCAGGAAAGGTTTTCCAAGCAGAATCCTTTATGCGGACTTTAAGCAACG
Seq C2 exon
GTACAAGATTCTTAATGCCTCAGCCATTCCAGAGGGCCAGTTCATTGACAGCAAAAAGGCTTCAGAAAAGCTTCTTTCCTCCATTGATGTGGACCACAACCAATACAGATTTGGCCACACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000779-'15-16,'15-15,16-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(6.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAATCTGAACAAGCTGATGACT
R:
TAGTGTGGCCAAATCTGTATTGGT
Band lengths:
210-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]