MmuEX6086304 @ mm10
Exon Skipping
Gene
ENSMUSG00000060180 | Myh13
Description
myosin, heavy polypeptide 13, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339967]
Coordinates
chr11:67344981-67348923:+
Coord C1 exon
chr11:67344981-67345068
Coord A exon
chr11:67347889-67348006
Coord C2 exon
chr11:67348800-67348923
Length
118 bp
Sequences
Splice sites
3' ss Seq
ACACCCTGCCCTTTCCCCAGGTG
3' ss Score
11.21
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GAAAACTTAAACAAATTGATGACCAACCTAAGGAGCACCCATCCTCACTTTGTGCGATGCCTGATTCCCAATGAGACCAAGACTCCTG
Seq A exon
GTGTGATGGACCACTACTTGGTCATGCATCAGCTGCGCTGTAATGGGGTCCTGGAGGGCATCCGGATCTGCAGGAAAGGGTTCCCCAGTCGAATCCTCTATGCTGACTTCAAACAACG
Seq C2 exon
GTACCGGATCCTTAACGCCAGTGCCATCCCGGAAGGGCAGTTCATCGACAGCAAGAACGCCTCGGAGAAGCTCCTGAACTCCATCGATGTGGACCGAGAGCAGTTCCGATTCGGCCATACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060180-'8-32,'8-21,19-32=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(6.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTAAACAAATTGATGACCAACCT
R:
GAATCGGAACTGCTCTCGGTC
Band lengths:
196-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types