HsaEX6020972 @ hg19
Exon Skipping
Gene
ENSG00000006788 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:7571]
Coordinates
chr17:10235416-10243554:-
Coord C1 exon
chr17:10243467-10243554
Coord A exon
chr17:10236391-10236508
Coord C2 exon
chr17:10235416-10235539
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCGGGACGTTCTCTCTCCAGGTG
3' ss Score
10.79
5' ss Seq
GCGGTAGGT
5' ss Score
9
Exon sequences
Seq C1 exon
GAAAATTTAAACAAATTGATGACTAACTTAAGGAGCACCCACCCTCACTTTGTACGATGTCTGATTCCCAATGAGACCAAGACTCCTG
Seq A exon
GTGTGATGGACCACTACTTGGTCATGCACCAGCTGCGCTGTAACGGGGTCCTCGAGGGCATCCGGATTTGCAGGAAGGGATTCCCCAGCCGGATCCTCTATGCTGACTTCAAGCAGCG
Seq C2 exon
GTACCGGATCCTCAATGCCAGTGCTATCCCTGAAGGGCAGTTCATTGACAGCAAAAATGCCTCAGAGAAGCTCCTCAACTCCATCGATGTGGACCGGGAGCAGTTCAGGTTCGGCAACACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(6.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAATTGATGACTAACTTAAGGAGC
R:
CTTGGTGTTGCCGAACCTGAA
Band lengths:
202-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)