BtaEX6087263 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31097422-31101678:+
Coord C1 exon
chr19:31097422-31097549
Coord A exon
chr19:31100267-31100375
Coord C2 exon
chr19:31101531-31101678
Length
109 bp
Sequences
Splice sites
3' ss Seq
CACCCCTCCCCCGTGTCCAGGTG
3' ss Score
10.21
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GACTGTTCTCTTCTATCATGCGGGAGCTTGCCAACATCACCCATGATGGGCCCAAATGGATTTTACTGGATGGTGACATTGACCCGATGTGGATCGAGTCTCTGAACACTGTCATGGATGATAACAAG
Seq A exon
GTGCTGACCCTGGCAAGCAACGAGAGGATCCCTCTGAATCCAACCATGAGGCTTCTCTTTGAGATCAGCCACCTGCACACGGCCACGCCAGCCACTGTCTCCAGAGCAG
Seq C2 exon
GGATCCTGTACATTAACCCGGCAGACCTGGGCTGGAATCCTCCTGTGAGCAGCTGGATCGACAGGAGAGAGATCCAGACAGAGAGAGCCAACCTAACCATCCTATTTGACAAGTACCTTCCGACCTGCTTAGATGCGCTCAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'44-53,'44-52,45-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(30.7=100)
A:
PF077289=AAA_5=PD(25.5=94.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTTGCCAACATCACCCAT
R:
CGCATCTAAGCAGGTCGGAAG
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]