MmuEX6086218 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:66025136-66029461:-
Coord C1 exon
chr11:66029334-66029461
Coord A exon
chr11:66026986-66027094
Coord C2 exon
chr11:66025136-66025283
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATCCCTTCTGTGGATTGCAGGTA
3' ss Score
8.9
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GACTGTTCTCTTCCATCATGAGAGAGCTTGCCATCATCTCTCATGATGGGCCCAAGTGGATCTTACTGGATGGCGATATAGACCCGATGTGGATAGAGTCTCTGAACACAGTCATGGATGATAACAAG
Seq A exon
GTACTGACCCTGGCAAGCAACGAGAGAATCCCCCTTAACCCCACAATGCGTCTTCTTTTCGAGATCAGCCACCTGCGCACAGCCACACCAGCAACCGTCTCCAGAGCAG
Seq C2 exon
GGATCCTGTACATAAACCCTGCAGACCTGGGATGGAACCCTCCAGTAAGCAGCTGGATTGATCAGAGAGAAGTCCAGACTGAGAGAGCCAACTTGACCATCCTGTTTGACAAATATCTTCCTACCTGCTTGGACACCCTCAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'37-45,'37-44,39-45=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(30.7=100)
A:
PF077289=AAA_5=PD(25.5=94.6)
C2:
NO
Main Skipping Isoform:
ENSMUST00000080665fB8930
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTCTCATGATGGGCCCA
R:
CTGGTTCTGAGGGTGTCCAAG
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types