RnoEX0028667 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52537009-52553435:-
Coord C1 exon
chr10:52553225-52553435
Coord A exon
chr10:52546245-52546353
Coord C2 exon
chr10:52537009-52537183
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATCCTTTCTGTGGATTCCAGGTA
3' ss Score
8.38
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTAGTCCAGCTGGAGGAACTGCTAGCCGTGAGGCACTCTGTGTTCATCGTGGGTGGTGCTGGTACTGGGAAGTCACAGGTACTGAAGTCTTTACACAAGACCTATCAGATCATGAGATGTCGCCCTGTGTGGACTGACCTTAACCCCAAAGCTGTCACAAATGACGAACTCTTTGGCATCATCAATCCAGCCACTCGAGAATGGAAGGACG
Seq A exon
GTACTGACCCTAGCAAGCAACGAGAGAATCCCCCTTAACCCCACAATGCGTCTCCTTTTTGAGATCAGTCACCTGCGCACAGCCACACCAGCAACCGTCTCCAGAGCAG
Seq C2 exon
ATTTAAGAAGATAATCCCAGTCCCAGAGCAGAGCATGATCCAGATGCTGTGCTACCTCCTTGAGTGCCTCCTGACAAAGGAGGCTGTCCCTGCAGACTGCCCCAAGGAAATCTATGAACTCTATTTTGTGTTTGCTGCCATCTGGGCATTTGGCAGTTCCATGGTCCAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171_MULTIEX2-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(42.3=81.7)
A:
PF077289=AAA_5=PD(25.5=94.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTGTTCATCGTGGGTGG
R:
CACTCAAGGAGGTAGCACAGC
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]