DreEX6040393 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19490144-19494162:-
Coord C1 exon
chr16:19494035-19494162
Coord A exon
chr16:19493697-19493845
Coord C2 exon
chr16:19490144-19490294
Length
149 bp
Sequences
Splice sites
3' ss Seq
TGTTGTGCATGTCTGTGCAGGTT
3' ss Score
9.2
5' ss Seq
CCTGTGAGA
5' ss Score
2.4
Exon sequences
Seq C1 exon
GTTTATTGTCACATTTCATGCGGGATCAAGCCAGTAACTCTCACTCAGGGCCCAAGTGGATTGTTCTGGATGGAGACATTGACCCCATGTGGATTGAGTCTCTTAACACCGTCATGGATGACAACAAG
Seq A exon
GTTCTTACTTTGGCTAATAATGAACGGATTCCTCTCACTCCCTCGATGAGACTACTGTTTGAGATCAGCCATCTGAGACATGCCACTCCTGCCACCGTGTCACGAGCTGGCATATTGTACATCAATCCTCAAGAGCTTAGCTGGAGCCT
Seq C2 exon
GTCTGTTATGAGTTGGATTGATCGCAGAGAGAGACAAACTGAGAGAGCACACTTGACCATTCTGTTTGACAAATACATCCCTCGCTGTATAGAAAAAATGAGAAGCTCCTTTAAGACCATCATTCCTATTCCTGAGAACAGCATGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(30.7=100)
A:
PF077289=AAA_5=PD(25.5=70.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAACTCTCACTCAGGGCCC
R:
TGAACCATGCTGTTCTCAGGA
Band lengths:
246-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]