BtaEX6026616 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30582199-30594470:+
Coord C1 exon
chr4:30582199-30582349
Coord A exon
chr4:30582811-30582959
Coord C2 exon
chr4:30594320-30594470
Length
149 bp
Sequences
Splice sites
3' ss Seq
TGCTGTGCTGCTCTGTCCAGGTG
3' ss Score
9.32
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
GATTATTTACTCTCAACTTGCAGGTCTGTTTTCATCCATTCTGCGAGAACAAGCAAATCTTAGGCATGATGGACCTAAATGGATAGTCCTGGATGGTGATATCGATCCCATGTGGATTGAATCACTAAACACTGTCATGGATGATAACAAG
Seq A exon
GTGCTGACACTGGCCAGCAATGAGCGCATAGCTCTGACTCCCTCTATGAAGCTGCTCTTTGAGATTCATCACTTGAGGACTGCAACCCCAGCTACTGTTTCCAGAGCTGGTATTCTGTATGTGAACCCACAAGATTTAGGCTGGAATCC
Seq C2 exon
GTATGTGGCCAGTTGGATAGACAGAAGGCGGCATCAGTCAGAAAAGGCCAATTTAACAATTCTTTTTGATAAATACGTTCCTGCCTGCTTGGAAAAGCTGAGAACAAGCTTTAAAACCATCACTTCAATTCCAGAGAGCAGCCTGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'52-54,'52-53,53-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(34.2=100)
A:
PF077289=AAA_5=PD(24.0=70.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGAACAAGCAAATCTTAGGC
R:
CCAGGCTGCTCTCTGGAATTG
Band lengths:
255-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]