MmuEX6083431 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118030260-118038791:-
Coord C1 exon
chr12:118038664-118038791
Coord A exon
chr12:118036390-118036538
Coord C2 exon
chr12:118030260-118030410
Length
149 bp
Sequences
Splice sites
3' ss Seq
CCACATGCTGCTCATTGTAGGTG
3' ss Score
7.2
5' ss Seq
TCCGTGAGC
5' ss Score
4.32
Exon sequences
Seq C1 exon
GTCTCTTCTCATCCATTCTGAGAGAGCAGGCAAATCTCACACATGATGGGCCAACCTGGATAGTCCTGGATGGGGATATTGACCCCCTGTGGATCGAGTCCCTGAACACAGTGATGGATGATAACAAG
Seq A exon
GTGCTGACCCTGGCCAGCAATGAACGAGTGGCCCTCAAACCTTCCATGAGGCTTCTATTCGAGACCCATCACCTGCGGACAGCCACACCAGCCACGGTCTCCAGAGCTGGCATTTTGTATGTGAACCCGCAGGATCTGGGCTGGAATCC
Seq C2 exon
GTATGTGGCCAGTTGGATAGACAGAAGACGGCATCAATCAGAAAAGGCCAATTTAACTATTCTTTTTGATAAATACATTCCTGTGTGCTTGGAGAAGCTAAGAACGAGCTTTAAAGCCATCACTTCGGTTCCAGAGAGCAGCCTGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'51-52,'51-51,53-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(30.7=100)
A:
PF077289=AAA_5=PD(25.5=70.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATTCTGAGAGAGCAGGCA
R:
CTCTGGAACCGAAGTGATGGC
Band lengths:
253-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types