GgaEX1020247 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1062188-1064617:+
Coord C1 exon
chr18:1062188-1062315
Coord A exon
chr18:1062817-1062925
Coord C2 exon
chr18:1064470-1064617
Length
109 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTGTGCCGTATGCAGGTG
3' ss Score
10.11
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGCTGTTTTCATCAATCATGAGAGAGCTGGCCAACATCACACACGATGGCCCCAAGTGGATGGTACTAGATGGAGATATTGATCCGATGTGGATTGAGTCTCTTAATACAGTGATGGATGATAATAAG
Seq A exon
GTGCTGACCCTGGCAAGCAATGAGAGAATCCCCCTGAAGCCAACAATGAGATTGGTGTTTGAGATCAGCCACTTGCGTACAGCCACCCCCGCAACTGTGTCCAGAGCGG
Seq C2 exon
GGATCCTGTACATCAACTCAGCAGATCTGGGCTGGAATCCCCCAGTGAGCAGCTGGATTGACAAGCGAGAGATCCAGTCAGAAAGAGCCAACCTGACCATTCTCTTTGATAAGTACCTGCCACCTTGCCTGGACACCCTGAGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'38-39,'38-38,39-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(30.7=100)
A:
PF077289=AAA_5=PD(25.5=94.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGAGAGAGCTGGCCAACA
R:
AGGCAAGGTGGCAGGTACTTA
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]