RnoEX0028417 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145937622-145945042:-
Coord C1 exon
chr6:145944915-145945042
Coord A exon
chr6:145943540-145943688
Coord C2 exon
chr6:145937622-145937772
Length
149 bp
Sequences
Splice sites
3' ss Seq
CCACATGCCGCTCATTGTAGGTG
3' ss Score
7.06
5' ss Seq
CCCGTAAGC
5' ss Score
4.37
Exon sequences
Seq C1 exon
GTCTCCTCTCGTCCATTCTGAGAGAGCAGGCAAATCTCACACATGATGGGCCAACCTGGATAGTCCTGGATGGTGATATTGACCCACTGTGGATCGAGTCCTTGAACACGGTCATGGATGATAACAAG
Seq A exon
GTGCTGACCCTCGCCAGCAATGAACGAGTGGCCCTCACACCCTCCATGAGGCTTCTGTTTGAGACCCACCACCTACAGACAGCCACACCAGCCACGGTCTCCAGAGCTGGCATTTTGTATGTGAACCCGCAGGACCTGGGCTGGAACCC
Seq C2 exon
GTATGTGGCCAGTTGGATAGACAGAAGGCGGCATCAATCAGAAAAGGCCAATTTAACTATTCTTTTTGATAAATACATTCCCGTGTGCTTGGAGAAGCTAAGAACTAGCTTTAAAGCCATCACTTCTGTTCCAGAGAGCAGCCTGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'56-57,'56-56,57-57
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(30.7=100)
A:
PF077289=AAA_5=PD(25.5=70.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCACACATGATGGGCCAAC
R:
CACCAGGCTGCTCTCTGGAA
Band lengths:
242-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]