RnoEX0028668 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52537009-52546353:-
Coord C1 exon
chr10:52546245-52546353
Coord A exon
chr10:52544763-52544910
Coord C2 exon
chr10:52537009-52537183
Length
148 bp
Sequences
Splice sites
3' ss Seq
CACATTCCTTGTTCACTCAGGGA
3' ss Score
7.74
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
GTACTGACCCTAGCAAGCAACGAGAGAATCCCCCTTAACCCCACAATGCGTCTCCTTTTTGAGATCAGTCACCTGCGCACAGCCACACCAGCAACCGTCTCCAGAGCAG
Seq A exon
GGATCCTGTACATAAACCCTGCAGACCTGGGATGGAACCCTCCAGTAAACAGCTGGATAGACCAAAGAGAGGTCCAAACTGAGAGAGCCAACCTGACCATCTTGTTTGACAAATACCTTCCTACCTGCTTGGACACCCTCAGAACCAG
Seq C2 exon
ATTTAAGAAGATAATCCCAGTCCCAGAGCAGAGCATGATCCAGATGCTGTGCTACCTCCTTGAGTGCCTCCTGACAAAGGAGGCTGTCCCTGCAGACTGCCCCAAGGAAATCTATGAACTCTATTTTGTGTTTGCTGCCATCTGGGCATTTGGCAGTTCCATGGTCCAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171_MULTIEX2-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(25.5=94.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCAACGAGAGAATCCCCC
R:
GGAACTGCCAAATGCCCAGAT
Band lengths:
256-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]