MmuEX6086219 @ mm9
Exon Skipping
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65830867-65840596:-
Coord C1 exon
chr11:65840488-65840596
Coord A exon
chr11:65838638-65838785
Coord C2 exon
chr11:65830867-65831041
Length
148 bp
Sequences
Splice sites
3' ss Seq
CACATGTCCTGTGTACTCAGGGA
3' ss Score
7.53
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTACTGACCCTGGCAAGCAACGAGAGAATCCCCCTTAACCCCACAATGCGTCTTCTTTTCGAGATCAGCCACCTGCGCACAGCCACACCAGCAACCGTCTCCAGAGCAG
Seq A exon
GGATCCTGTACATAAACCCTGCAGACCTGGGATGGAACCCTCCAGTAAGCAGCTGGATTGATCAGAGAGAAGTCCAGACTGAGAGAGCCAACTTGACCATCCTGTTTGACAAATATCTTCCTACCTGCTTGGACACCCTCAGAACCAG
Seq C2 exon
ATTTAAGAAAATAATTCCAGTCCCAGAGCAGAGTATGATCCAGATGCTGTGCTACCTCCTTGAGTGCCTCCTGACAAAGGAGGATATCCCTGCAGACTGCCCCAAGGAAATATATGAACTCTATTTTGTGTTTGCTGCCATCTGGGCATTTGGCAGTGCTGTGATCCAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'37-37,'37-36,38-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(25.5=94.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTAACCCCACAATGCGTCT
R:
CTTGGATCACAGCACTGCCAA
Band lengths:
247-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: