BtaEX6087262 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31100267-31102510:+
Coord C1 exon
chr19:31100267-31100375
Coord A exon
chr19:31101531-31101678
Coord C2 exon
chr19:31102336-31102510
Length
148 bp
Sequences
Splice sites
3' ss Seq
TATATTCTCTGTGCTCTCAGGGA
3' ss Score
9.07
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTGCTGACCCTGGCAAGCAACGAGAGGATCCCTCTGAATCCAACCATGAGGCTTCTCTTTGAGATCAGCCACCTGCACACGGCCACGCCAGCCACTGTCTCCAGAGCAG
Seq A exon
GGATCCTGTACATTAACCCGGCAGACCTGGGCTGGAATCCTCCTGTGAGCAGCTGGATCGACAGGAGAGAGATCCAGACAGAGAGAGCCAACCTAACCATCCTATTTGACAAGTACCTTCCGACCTGCTTAGATGCGCTCAGAACAAG
Seq C2 exon
ATTTAAGAAGATAATTCCAGTCCCAGAGCAGAGCACAGTTCAGATGCTGTGCCACCTTCTTGAGTGTCTGCTGACCGAGGAGGACATCCCCGCAGACTGCCCCAAAGACACCTACGAGCTTTACTTTGTGTTTGCTGCCATCTGGGCTTTTGGTGGAGCACTGGTCCACGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'45-54,'45-53,46-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(25.5=94.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAAGCAACGAGAGGATC
R:
CTCCACCAAAAGCCCAGATGG
Band lengths:
258-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]