MmuEX6086219 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:66017365-66027094:-
Coord C1 exon
chr11:66026986-66027094
Coord A exon
chr11:66025136-66025283
Coord C2 exon
chr11:66017365-66017539
Length
148 bp
Sequences
Splice sites
3' ss Seq
CACATGTCCTGTGTACTCAGGGA
3' ss Score
7.53
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTACTGACCCTGGCAAGCAACGAGAGAATCCCCCTTAACCCCACAATGCGTCTTCTTTTCGAGATCAGCCACCTGCGCACAGCCACACCAGCAACCGTCTCCAGAGCAG
Seq A exon
GGATCCTGTACATAAACCCTGCAGACCTGGGATGGAACCCTCCAGTAAGCAGCTGGATTGATCAGAGAGAAGTCCAGACTGAGAGAGCCAACTTGACCATCCTGTTTGACAAATATCTTCCTACCTGCTTGGACACCCTCAGAACCAG
Seq C2 exon
ATTTAAGAAAATAATTCCAGTCCCAGAGCAGAGTATGATCCAGATGCTGTGCTACCTCCTTGAGTGCCTCCTGACAAAGGAGGATATCCCTGCAGACTGCCCCAAGGAAATATATGAACTCTATTTTGTGTTTGCTGCCATCTGGGCATTTGGCAGTGCTGTGATCCAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'39-46,'39-45,40-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(25.5=94.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTAACCCCACAATGCGTCT
R:
CTTGGATCACAGCACTGCCAA
Band lengths:
247-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types