GgaEX0001200 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1080532-1084081:+
Coord C1 exon
chr18:1080532-1080640
Coord A exon
chr18:1082185-1082332
Coord C2 exon
chr18:1083907-1084081
Length
148 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTCTCACCCTGAAGGGA
3' ss Score
7.02
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GTGCTGACCCTGGCAAGCAATGAGAGAATCCCCCTGAAGCCAACAATGAGATTGGTGTTTGAGATCAGCCACTTGCGTACAGCCACCCCCGCAACTGTGTCCAGAGCGG
Seq A exon
GGATCCTGTACATCAACTCAGCAGATCTGGGCTGGAATCCCCCAGTGAGCAGCTGGATTGACAAGCGAGAGATCCAGTCAGAAAGAGCCAACCTGACCATTCTCTTTGATAAGTACCTGCCACCTTGCCTGGACACCCTGAGGACAAG
Seq C2 exon
GTTTAAGAAGATTATTCCCATTCCTGAGCAGAGCATGGTTCAGATGTTGTGTTACCTCCTTGAGTGCCTCCTGACGGAGGAGAACACACCTCCCGACTGCCCCAAGGAGCTGTATGAACTTTACTTTGTCTTTGCTGCTGTCTGGGCCTTTGGTGGATCAATGTTTCAAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(25.5=94.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAATCCCCCTGAAGCCAA
R:
ACATTGATCCACCAAAGGCCC
Band lengths:
251-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]