BtaEX6087269 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31049561-31054849:+
Coord C1 exon
chr19:31049561-31049713
Coord A exon
chr19:31051529-31051654
Coord C2 exon
chr19:31054610-31054849
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACCCCAAGCTCTTCTTCCAGGTA
3' ss Score
7.41
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
GTTCAACGCCACCTTTCCAAACTCTTTGACAATATGGCCAAGATGCAGTTCCAACTGGACGCCAGTGAGAAGCCAACCAAGACCAGCCTTGGCATGTACAGCAAGGAAGGAGAATATGTGGCCTTCAGCGAGCCCTGTGACTGCAGTGGGCAG
Seq A exon
GTAGAAATATGGCTGAACCACGTGCTGGCTCACATGAAGGCCACGGTGAGGCACGAGATGACAGAAGGTATAACCGCCTACGAAGAAAAGCCCAGGGAACAGTGGCTCTTTGACTACCCAGCTCAG
Seq C2 exon
GTGGCCCTGACCTGCACCCAGATCTGGTGGACCACAGAGGTGGGCATGGCATTTGCAAGGCTGGAGGAAGGCTATGAGAATGCCATGAAGGACTATTACAAGAAGCAAGTGGCCCAGCTCAAAACCCTCATCACCATGCTCATTGGCCAGCTCTCCAAGGGGGACCGGCAGAAGATCATGACCATATGCACCATCGATGTCCATGCCCGGGACGTGGTGGCCAAGATGATTGCTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'24-31,'24-30,25-31=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.1=100)
A:
PF083938=DHC_N2=PD(6.5=64.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTTGGCATGTACAGCAAG
R:
GTCATGATCTTCTGCCGGTCC
Band lengths:
251-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]