HsaEX6021153 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11699731-11704442:+
Coord C1 exon
chr17:11699731-11699883
Coord A exon
chr17:11701122-11701247
Coord C2 exon
chr17:11704203-11704442
Length
126 bp
Sequences
Splice sites
3' ss Seq
AACCTGAGTTGTTCTTTCAGGTA
3' ss Score
7.3
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
GTTCAACGTCACCTTTCCAAACTCTTTGACAACATGGCCAAGATGCGATTCCAGCTAGATGCCAGTGGGGAACCAACCAAGACAAGCCTCGGCATGTACAGCAAAGAAGAGGAGTATGTGGCTTTCAGTGAGCCCTGTGACTGCAGCGGGCAG
Seq A exon
GTAGAAATATGGCTGAACCATGTCCTTGGTCACATGAAGGCCACTGTGAGGCATGAGATGACAGAAGGTGTAACTGCCTATGAAGAAAAGCCGAGGGAGCAGTGGCTTTTTGACCACCCAGCTCAG
Seq C2 exon
GTGGCCCTGACCTGTACTCAGATCTGGTGGACAACAGAAGTGGGCATGGCATTTGCCAGGCTGGAGGAAGGCTATGAGAGTGCCATGAAGGACTATTATAAGAAGCAAGTGGCCCAGCTCAAAACCCTTATCACCATGCTGATTGGCCAGCTCTCCAAGGGAGACCGGCAGAAGATTATGACTATATGCACCATCGATGTGCATGCCCGGGATGTGGTAGCCAAGATGATTGCTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'48-43,'48-41,49-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.1=100)
A:
PF083938=DHC_N2=PD(6.5=64.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACATGGCCAAGATGCGAT
R:
GCTGGGCCACTTGCTTCTTAT
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains