GgaEX6015781 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1047356-1049480:+
Coord C1 exon
chr18:1047356-1047508
Coord A exon
chr18:1048481-1048606
Coord C2 exon
chr18:1049241-1049480
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGATTTAATCTCCTCTCCAGGTT
3' ss Score
9.25
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GTACAACGTCATCTTTCCAAACTCTTTGACAGCCTGGCCAAGATGAGATTCCAGCTGGACTCTGAGCAAAAGCCAACCAAGATTGGCCTGGGAATGTACAGCAAGGAGGAGGAGTACGTCAGCTTCAGCGAGCCATGTGACTGCAGTGGGCAG
Seq A exon
GTTGAGGTCTGGCTGAATCATGTACTGAACAGCATGAGGGCTACAGTCAGAGATGAGATGACAGAAGCTGTAACAGCGTATGAGGAGAAGCCGAGGGAACAGTGGCTCTTTGATTACCCTGCTCAG
Seq C2 exon
GTGGCTCTGTGCTGCACCCAGATTTGGTGGACGACTGAGGTTGGGATTGCCTTCGCCAGGGTGGAGGAAGGCTACGAGAATGCCATGAAGGAATATCACAAGAAGCAAGTGACCCAGCTGAACACCCTCGTTACCATGCTAATTGGGCAGCTCTCCAAGGGTGACAGGCAGAAAATCATGACGATATGCACCATTGATGTGCACGCTCGGGATGTGGTAGCAAAGATGATAGCACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'27-28,'27-27,28-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.0=100)
A:
PF083938=DHC_N2=PD(6.5=64.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGACTCTGAGCAAAAGC
R:
GAGCTGCCCAATTAGCATGGT
Band lengths:
254-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]