BtaEX6088099 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001828 | SCRN2
Description
Bos taurus secernin 2 (SCRN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001205804]
Coordinates
chr19:39239297-39240069:+
Coord C1 exon
chr19:39239297-39239512
Coord A exon
chr19:39239631-39239796
Coord C2 exon
chr19:39239889-39240069
Length
166 bp
Sequences
Splice sites
3' ss Seq
CACTGTGTCCTCCTTGGCAGGGG
3' ss Score
8.49
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
AGGGGGTCCACAACATCTCCAACCAGCTGAGCATCGGCTCGGACATCTCGGCAGAACACCCTGAGCTCCGGCCCCACGCCCAGGTCCAGGGCTGGTGGGACGGGCAGGGCACCTTTGACTTTGCCCAGGTCTTCTCCCTGAGCCAGCAGCCTGTGCGCATGGAGGCTGCCAAGGCCCGCTTCCGGGCCGGGCAGGAGCTGCTGCAGCAACAACAAG
Seq A exon
GGGGTATCACAGCAGAGGTGATGATGGGCATCCTCAGGGACAAGGAGAGCGGCATCTGTATGGACTCTGGGGGCTTCCGCACCACGGCCAGCATGGTGTCTGTGCTGCCCCGGGACACCACCCAGCCCTGCGTGCACTTCCTCACTGCCACACCAGACCCATCCCG
Seq C2 exon
GTCTGTGTTCAAACCTTTCATCTTTGGGGTGGGGGCAGCCCAACCCCCCCAGGTGCTGTCTCCCACTTTTGGAGCACAGGACCCTGTTCGGACCCTGCCTCGATTCCAGACTCAGGTGGATCGCCGGCACCCTCTCTACCGTGGACACCAGGTGGCCCTGGGACTGATGGAGAGTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001828-'4-11,'4-8,5-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.196 C2=0.344
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(29.1=100)
A:
PF0357710=Peptidase_C69=PD(4.0=17.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCCACAACATCTCCAACC
R:
CCCCACCCCAAAGATGAAAGG
Band lengths:
247-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]