RnoEX6049362 @ rn6
Exon Skipping
Gene
ENSRNOG00000010214 | Scrn2
Description
secernin 2 [Source:RGD Symbol;Acc:1307741]
Coordinates
chr10:84969826-84970562:+
Coord C1 exon
chr10:84969826-84970041
Coord A exon
chr10:84970137-84970302
Coord C2 exon
chr10:84970385-84970562
Length
166 bp
Sequences
Splice sites
3' ss Seq
GCCCTCTCCACCCTTGGTAGGGA
3' ss Score
5.97
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAGGTGCCCGAAATATTTCCAACCAACTGAGCATTGGAACAGACATCTCAGCAGAACACCCAGAGCTCCGCAGCCATGCCAAGGCTCAGGGTTGGTGGTCTGGGCAGGGCGTCTTTGACTTTGCGGAGGTCTTCTCCCTGACCCAGCAGCCTGTGCGCATGGAGGCTGCCAAGGCCCGCTTCCGGGCAGGGTGTGAGATGCTGCAGCGACAACAAG
Seq A exon
GGAGCATCACAGCAGAGGTGATGATGGACATCCTCAGGAACAAGGAGAGCGGCATCTGCATGGACTCTGGAGGCTTCCGTACCACAGCCAGTATGGTGTCAGTCCTGCCCCAGGATCCCACAAAGCCTTGTGTTCACTTCCTCACTGCCACACCAGACCCATCCAG
Seq C2 exon
GTCGGTATTCAAACCTTTCATCTTTGAAGTGGGGGTGTCCCAGCCCCCCCAGGTGTTGTCCCCCACTTTTGGAGCCCAGGACCCTGTTCGGATCCTCCCCAGATTCCAGACTCAGGTGGACCGTCGACATTCACTGTATCGTGGACACCAGGCAGCCCTGGGGCTGATGGACGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010214-'13-6,'13-5,14-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.161 C2=0.200
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(38.1=100)
A:
PF0357710=Peptidase_C69=PD(6.9=23.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTTTGACTTTGCGGAGGT
R:
CAGTGAATGTCGACGGTCCAC
Band lengths:
243-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]