GgaEX7011009 @ galGal4
Exon Skipping
Gene
ENSGALG00000011945 | SCRN2
Description
secernin 2 [Source:HGNC Symbol;Acc:HGNC:30381]
Coordinates
chr27:3895249-3895962:+
Coord C1 exon
chr27:3895249-3895464
Coord A exon
chr27:3895545-3895710
Coord C2 exon
chr27:3895785-3895962
Length
166 bp
Sequences
Splice sites
3' ss Seq
GGATCCGCTTTGCCCAGCAGGAC
3' ss Score
4.92
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AGGGCAGCCGCAACATCTCCAACCAGCTCAGCATCGGGACGGACATCACAGCTGAGCACCCAGGGCTGCGGCAGCGAGCCCAGAGCCAGGGCTGGTGGAGCGGGGTCGGCCAGTTCAGCTTTGCTGAGGTTTTCTCCCTGGCACAGCAGCCGCCACGCATGGAGGCTGCCAAGAGCCGCTATCGTGCTGGCAAGGAGCTGCTGCAGCAGCACGCAG
Seq A exon
GACGCATCACAGCAGAGACGTTCATGGCCATCCTGCGGGATAAGGACAGCGGCATCTGCGTGGACTCGGAGGGTTTCCGCACAGCAGGCAGCATGGTGTCCGTGCTGCCCCAGGACCCTGCCTTGCCCTGCGTCCACTTCTTCACGGCCACCCCGGACCCCTCCAG
Seq C2 exon
GTCTGTCTTCAAGCCCTTCGTCTTCGTGCCTGGCCTTAAGCCTGCGCCACAGGTGAGTTCTCCCACCTTCAGCGACGACCCCGCCAAGAAGGTGCCACGCTTCCAGAGCACGGTCGATCGGAGGCACGAGCTCTACCGCCGGCACCAGGCAGCGCTGGAGCTGATGGAGAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011945-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=0.018 C2=0.317
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(33.5=100)
A:
PF0357710=Peptidase_C69=PD(9.8=37.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACATCTCCAACCAGCTCA
R:
CTTAAGGCCAGGCACGAAGAC
Band lengths:
247-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]