DreEX6034751 @ danRer10
Exon Skipping
Gene
ENSDARG00000016611 | scrn3
Description
secernin 3 [Source:ZFIN;Acc:ZDB-GENE-030131-4783]
Coordinates
chr9:2513916-2517227:-
Coord C1 exon
chr9:2517015-2517227
Coord A exon
chr9:2514482-2514644
Coord C2 exon
chr9:2513916-2514096
Length
163 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTTTTTCTTCCAGGCC
3' ss Score
12.15
5' ss Seq
ACGGTACGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
CCGGCTACAGGAACATCTCCAATCAGTACTCCATTACTACTAAGATTGACAAGGAGCACCCGGGGATGAGGACGTACGCGAAAGAGCAGGGCTGGTGGGACGGAGAGAGCGAGTTCAGCTTTACTGATGTTTACTCGTACTCCAGCACCGCCCGCATCCAGGCGGCAGGCGGAAGATACTGTGAGGGACAGAAACTGCTGCAAAAGAGCAACG
Seq A exon
GCCACATCTCTGCACAGACGATGATGGATATTTTGCGGGATAAGGAGAGCGGGATCAACATGGAGGGGATGTTCATGAGCACAGGCAGTATGGTGTCTGTCATCCCCAAAGCTGATCATTTACCCGGAGTCCACTTCTTCACCGCCACTCCAGACCCCGAACG
Seq C2 exon
GTCTGTGTTTAAGCCGTTTGTGTTTGTGTCTGACGTGCCGCCGCTGAAACACACCAGTTCTCCATGTTTCGGGGAGGAGGATCCAGTGAAGAAGAAGCCCCGTTTCCAGAGCAAACCCAACCGCAAACACCCGCTGTTCCTGAAGCACGAGGTGGCGGCGGCCATCATCGACAGCTCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016611-'9-7,'9-5,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.091 C2=0.361
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(31.1=100)
A:
PF0357710=Peptidase_C69=PD(12.7=52.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATTGACAAGGAGCACCCG
R:
CCCCGAAACATGGAGAACTGG
Band lengths:
246-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]