GgaEX1051254 @ galGal4
Exon Skipping
Gene
ENSGALG00000014270 | SCRN3
Description
secernin 3 [Source:RefSeq peptide;Acc:NP_001244270]
Coordinates
chr7:16407271-16410639:-
Coord C1 exon
chr7:16410427-16410639
Coord A exon
chr7:16407799-16407961
Coord C2 exon
chr7:16407271-16407451
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGTATCTGAAATAGGTG
3' ss Score
8.06
5' ss Seq
AAGGTGATG
5' ss Score
5.22
Exon sequences
Seq C1 exon
GTGGTGTGCGGAATATTTCCAACCAGCTCTCTATCACTACCAAGATTGACAGAGAACATCCGGAGATGAGGGAATATGCCAAAAGCAAGGGCTGGTGGGATGGGGAAAAGGAATTTGATTTTGCTGCCACGTATTCTTATGTAAATACTGCCAGAATGACTACATCCAGGAGCCGCTACTGTGAAGGCTACAAACTTCTGAACAAACATAAAG
Seq A exon
GTGCTATCACTGCTGAAACAATGATGGAAATTCTTCGTGACAAAGAGAGTGGCATTAATATGGAAGGTGGCTTTATGACAACTGGAAGCATGGTGTCCGTGTTGCCTCAGGACCCTAACCTGCCATGCATTCACTTCTTTACGGGAACTCCAGACCCTGCAAG
Seq C2 exon
GTCTGTGTTCAAGCCATTCATTTTTGTGCCTGGAATTACTGAGTTATTAAAAACTAGCTCCCCCACATTTGGTCCTGATGACCCAGTCAAGAAGCAACCACGTTTTCAGAGTAAGCCAGATCGAAGACATGAGCTCTATAAAAAACATGAAAGTGCTGCTGTAGTTATGGAAACTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014270_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.088 C2=0.459
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(24.7=100)
A:
PF0357710=Peptidase_C69=PD(13.9=70.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAGATGAGGGAATATGCC
R:
ACGTGGTTGCTTCTTGACTGG
Band lengths:
257-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]