RnoEX0078708 @ rn6
Exon Skipping
Gene
ENSRNOG00000018657 | Scrn3
Description
secernin 3 [Source:RGD Symbol;Acc:1305064]
Coordinates
chr3:60032562-60042294:+
Coord C1 exon
chr3:60032562-60032771
Coord A exon
chr3:60040915-60041077
Coord C2 exon
chr3:60042120-60042294
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTTTCAAATGATTTCCCCAGGAA
3' ss Score
7.58
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
GAGTTCGTAATATTTCCAATCAGTTTTCCATAACAACCAAGATTGACCGGGAGCATCCAGACATGAGGAACTATGCTAAGCAGAGGGGCTGGTGGGATGGCAAAGAGGAGTTCGATTTTGCTGCAGCGTATTCTTACACTGACACGGCCACAATGATGACTTCACCAAGCAGATACTGCCAGGGCCACAAGCTTCTGAATAAACACAAAG
Seq A exon
GAAACATAACTTATGAAACGATGGTGGAAATTCTTCGCGACAGACCCAGTGGCATCAACATGAAGGGAGAATTCCTGACCACCGCAAGCATGGTTTCCATTTTACCCCAGGATCCCAGCCTTCCCTGCATTCACCTCCTTACAGGGACTCCACACCCTGAGAG
Seq C2 exon
GTCTGTTTTTAAGCCTTTCATATTTGTACCACATGTTTCGCCACTGTTGGATACAAAATCACCAACATTTGAACTTGAGAGGCCCGTGGCAAAGAAGCCATATGTCAAGCCCGACAGAAGACACCTACTCTACCAAAACCATCAACAGGCCTTGGAAATGATAAGTAACCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018657_MULTIEX1-5/7=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.052 C2=0.093
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(28.2=100)
A:
PF0357710=Peptidase_C69=PD(7.3=32.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGGCAAAGAGGAGTTCG
R:
TAGGTGTCTTCTGTCGGGCTT
Band lengths:
244-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]