BtaEX6008973 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012966 | SCRN3
Description
secernin 3 [Source:HGNC Symbol;Acc:HGNC:30382]
Coordinates
chr2:22410441-22422817:-
Coord C1 exon
chr2:22422605-22422817
Coord A exon
chr2:22411509-22411671
Coord C2 exon
chr2:22410441-22410621
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTTAAAATTTATTTCCTTAGGAA
3' ss Score
8.16
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
AGGGAGTTCGCAATATTTCTAATCAGCTTTCTATAACGACCAAAATTGATCGGGAACACCCAGACATGAGAAACTATGCCAAGCAGAGAGGTTGGTGGGATGGGAAAAAGGAATTCGATTTTGCTGCAACATACTCTTATCTTGACACAGCCAAGATGATGATTTCACCAGGCAGATACTGTGAAGGCTACAAACTTCTGAATAAGCATAAAG
Seq A exon
GAAACATAACTTTTGAAACAATGGTGGAAATTCTCCGAGATAAACCAAGTGGCATTAATATGGAGGGAGAATTCCTGACCACTGCAAGCATGGTTTCTATTTTACCTCAAGATTCCAAACTTCCTTGCATTCACTTCTTTACAGGGACTCCTGATCCTGAGAG
Seq C2 exon
ATCTGTTTTTAAGCCTTTCATATTTGTGCCGAATATTTCACAACTGTTGAACACCAGTTCACCTACATTTGAACTTGAAGATTCAGTTGGAAAGAAGCTACAATTTAACAGTAAGCCTGACAGAAGACATCCACTCTACCAAAAACATCAACAGGCCTTGGAAATACTAGATAATAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012966-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.018 C2=0.131
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(26.7=100)
A:
PF0357710=Peptidase_C69=PD(6.8=32.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTGGGATGGGAAAAAGGA
R:
AGTGGATGTCTTCTGTCAGGCT
Band lengths:
258-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]