MmuEX0041317 @ mm10
Exon Skipping
Gene
ENSMUSG00000008226 | Scrn3
Description
secernin 3 [Source:MGI Symbol;Acc:MGI:1921866]
Coordinates
chr2:73321985-73331157:+
Coord C1 exon
chr2:73321985-73322194
Coord A exon
chr2:73329763-73329925
Coord C2 exon
chr2:73330983-73331157
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTTTTAAATGATTTCCTCAGGAA
3' ss Score
7.17
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GCGTTCGTAATATTTCCAATCAGCTTTCCATAACAACCAAGATTGACCGGGAACATCCAGACATGAGGAACTACGCTAAGCAGAGGGGCTGGTGGGATGGCAAAGAAGAATTTGATTTTACTGCGGCCTATTCTTACATTGACACGGCTGCTATGATGACTTCACCAAGCAGGTACTGCCAGGGCTACAAGCTTCTGGATAAACACAGAG
Seq A exon
GAAACATAACTTTTGAAACGATGATGGAAATTCTTCGAGACAGACCCAGTGGCATCAACATGAAGGGAGAATTCCTGACCACGGCAAGCATGGTTTCTGTTTTACCTCAGGATCCCAGCCTTCCTTGCATTCACCTCTTTACTGCAACTCCGCACCCTGAGAG
Seq C2 exon
GTCTGTTTTTAAGCCTTTCATATTTGTACCACACATTTCACCACTGTTGGATACAAAATCACCAACATTTGAACCTGAAAGGCCAGTGGCAAAGAAGCCATATGTCAAGCCTGACAGAAGACACCCACTCTACCAAAAACATCAAGAGGCCTTGGAAATGATAAGTAACAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008226-'14-20,'14-18,19-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.018 C2=0.610
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PD(29.1=95.8)
A:
PF0357710=Peptidase_C69=PD(8.0=36.4)
C2:
NO
Main Skipping Isoform:
ENSMUST00000090811fB3599
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGGGAACATCCAGACATGA
R:
CCACTGGCCTTTCAGGTTCAA
Band lengths:
254-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types