DreEX6034752 @ danRer10
Exon Skipping
Gene
ENSDARG00000016611 | scrn3
Description
secernin 3 [Source:ZFIN;Acc:ZDB-GENE-030131-4783]
Coordinates
chr9:2510386-2514644:-
Coord C1 exon
chr9:2514482-2514644
Coord A exon
chr9:2513916-2514096
Coord C2 exon
chr9:2510386-2511555
Length
181 bp
Sequences
Splice sites
3' ss Seq
TTACTCTCTCTAATCCACAGGTC
3' ss Score
11.6
5' ss Seq
GGGGTCAGC
5' ss Score
1.33
Exon sequences
Seq C1 exon
GCCACATCTCTGCACAGACGATGATGGATATTTTGCGGGATAAGGAGAGCGGGATCAACATGGAGGGGATGTTCATGAGCACAGGCAGTATGGTGTCTGTCATCCCCAAAGCTGATCATTTACCCGGAGTCCACTTCTTCACCGCCACTCCAGACCCCGAACG
Seq A exon
GTCTGTGTTTAAGCCGTTTGTGTTTGTGTCTGACGTGCCGCCGCTGAAACACACCAGTTCTCCATGTTTCGGGGAGGAGGATCCAGTGAAGAAGAAGCCCCGTTTCCAGAGCAAACCCAACCGCAAACACCCGCTGTTCCTGAAGCACGAGGTGGCGGCGGCCATCATCGACAGCTCTGGG
Seq C2 exon
GAGAGAGGACAGAAGATAGAGAAGGAGATGAGAGATCTGGAGAAGCAGAAGCTGGAGGAGATGGAGAAATATCTGACTGAGGGCGTGGAAGACTCTTCCCTGCTGGTTCATCTCTTCACAGACACCGTAGAGGAGGAGTTCAGTGTTTACAGCAGCGCATGACTATATATTCACACGCATGGCCACCATATAAACACTAATAACACACATTTACAGTTTGGAATTATGCCATTAAAATAGGTGACTCACAAGTGTTACGAACAGAATCTTATATTGTGTGAGATTTATCTTGTTTGCATGTTTGTAAAGTTAATAATTTCAGAGTTGTTTGTAAATGTAATTAAGGTAACACTTTAGTTTGTTACTTTAGTTTGGTTTATTACCTGTAAATTATTATGATATTGGCTGATTATTAGCACTTATAAAGTATGATCTTATTCTACATCCCTAGTGCCGGTTTGTAATTTATTGAGCTAAAAGTCATAGTGAGAACTGTACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016611-'10-8,'10-7,11-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.361 C2=0.358
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PD(12.7=52.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACAGGCAGTATGGTGTC
R:
TGCGCTGCTGTAAACACTGAA
Band lengths:
246-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]