BtaEX6008974 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012966 | SCRN3
Description
secernin 3 [Source:HGNC Symbol;Acc:HGNC:30382]
Coordinates
chr2:22400874-22411671:-
Coord C1 exon
chr2:22411509-22411671
Coord A exon
chr2:22410441-22410621
Coord C2 exon
chr2:22400874-22401442
Length
181 bp
Sequences
Splice sites
3' ss Seq
CTTAATACGTTTTCTTCTAGATC
3' ss Score
7.7
5' ss Seq
ACGGTATGA
5' ss Score
8.54
Exon sequences
Seq C1 exon
GAAACATAACTTTTGAAACAATGGTGGAAATTCTCCGAGATAAACCAAGTGGCATTAATATGGAGGGAGAATTCCTGACCACTGCAAGCATGGTTTCTATTTTACCTCAAGATTCCAAACTTCCTTGCATTCACTTCTTTACAGGGACTCCTGATCCTGAGAG
Seq A exon
ATCTGTTTTTAAGCCTTTCATATTTGTGCCGAATATTTCACAACTGTTGAACACCAGTTCACCTACATTTGAACTTGAAGATTCAGTTGGAAAGAAGCTACAATTTAACAGTAAGCCTGACAGAAGACATCCACTCTACCAAAAACATCAACAGGCCTTGGAAATACTAGATAATAAGACG
Seq C2 exon
GAAAAAGCCAAAACAATGTTGGACAACATGAGAAAACTGGAGAAAGAACTGTTCAAAGAGATGGAATCAGTCCTTCAAAACAAGCATCTTCAAGTGGATAAAATTGTTAATCTTCTTCATCAGTGTACAGAAGATGAAATTAGAATTTATAAGTCAAATGTTAGTTCTTAGTGATCACATAAATGGTCAGCAATCATCCTCAAAGTTAGAATCCATTACTTTGGTAAATAATATAAACTTAGTTTGAGCAGATCTGACTATTCTTTAATAGCATTCAAGTGATAGCATGGCTATTAAAACTACATATAGCTTTGATGAAATACTGAGAAAGGAAATAAGATTGGAATTGGACATATAGATCATGGATAGTCAGGTGTTGCTTCAGGTATTGATGTATACATTTTGTTAGCCATGATATCTTAAAAAAATCACAATAATGAAATGTCCAATTCTGCATAAAGCATGAAACATTAAAATAATGTATGCATTTATTAGTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012966-'9-10,'9-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.131 C2=0.036
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PD(6.8=32.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAACTTCCTTGCATTCACT
R:
ACTTTGAGGATGATTGCTGACCA
Band lengths:
256-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]