RnoEX0078709 @ rn6
Exon Skipping
Gene
ENSRNOG00000018657 | Scrn3
Description
secernin 3 [Source:RGD Symbol;Acc:1305064]
Coordinates
chr3:60040915-60044533:+
Coord C1 exon
chr3:60040915-60041077
Coord A exon
chr3:60042120-60042294
Coord C2 exon
chr3:60044381-60044533
Length
175 bp
Sequences
Splice sites
3' ss Seq
TCAAAGACCCTTTCTTCTAGGTC
3' ss Score
7.06
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GAAACATAACTTATGAAACGATGGTGGAAATTCTTCGCGACAGACCCAGTGGCATCAACATGAAGGGAGAATTCCTGACCACCGCAAGCATGGTTTCCATTTTACCCCAGGATCCCAGCCTTCCCTGCATTCACCTCCTTACAGGGACTCCACACCCTGAGAG
Seq A exon
GTCTGTTTTTAAGCCTTTCATATTTGTACCACATGTTTCGCCACTGTTGGATACAAAATCACCAACATTTGAACTTGAGAGGCCCGTGGCAAAGAAGCCATATGTCAAGCCCGACAGAAGACACCTACTCTACCAAAACCATCAACAGGCCTTGGAAATGATAAGTAACCATAAG
Seq C2 exon
CTGAAACTCGAGGCCTTCTGGTCCTGGTTCTGTTCTCCTTGGCAATACTTGCAGGAGCCCCAGTCTGGTGCCCTGGGCCACCTCCACACACCTCACTGCTCATGACAACATTCAAGTGCTCATAGCCTTTGCCCTAGAGACTGCTCCAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018657_MULTIEX1-6/7=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.093 C2=0.059
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PD(7.3=32.1)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000081881fB13012
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATTCCTGACCACCGCAAG
R:
TGGAGCAGTCTCTAGGGCAAA
Band lengths:
244-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]