GgaEX1051252 @ galGal4
Exon Skipping
Gene
ENSGALG00000014270 | SCRN3
Description
secernin 3 [Source:RefSeq peptide;Acc:NP_001244270]
Coordinates
chr7:16404276-16407967:-
Coord C1 exon
chr7:16407799-16407967
Coord A exon
chr7:16407271-16407451
Coord C2 exon
chr7:16404276-16406090
Length
181 bp
Sequences
Splice sites
3' ss Seq
GTTCTATTTTATCTTCCTAGGTC
3' ss Score
10.05
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AAATAGGTGCTATCACTGCTGAAACAATGATGGAAATTCTTCGTGACAAAGAGAGTGGCATTAATATGGAAGGTGGCTTTATGACAACTGGAAGCATGGTGTCCGTGTTGCCTCAGGACCCTAACCTGCCATGCATTCACTTCTTTACGGGAACTCCAGACCCTGCAAG
Seq A exon
GTCTGTGTTCAAGCCATTCATTTTTGTGCCTGGAATTACTGAGTTATTAAAAACTAGCTCCCCCACATTTGGTCCTGATGACCCAGTCAAGAAGCAACCACGTTTTCAGAGTAAGCCAGATCGAAGACATGAGCTCTATAAAAAACATGAAAGTGCTGCTGTAGTTATGGAAACTATGAAG
Seq C2 exon
GGCAAAGGCAAAAAAATGCTGGAAGAGATACAGACGCTGGAGAAAAGGAAGATGAGTGAAATGGAATCAATCCTGCAGAATGGATATCTTGACATTAACCAACCGGTTAACCTTTTTTCACAGTGCATAGATGAAGAACTCAAAATATATGGTTAAAATTACTGTTTGAATGGATTGCTTTTATATTTACCTCTTCTAATGGAGTGGCTCTATAGACTACCTTCTATTTTCAATATACTGGTCATTTAGTACAGACAGTTTTAAAGATGCAGATTTCTATTCAGGCCAAACAGCTTTTGGTTGGAGAAAGCAAGGCAGAAAAGTGTCTTTAGAGCAAGGCAGTACCTTTGTAAGTGGCAAAAAGCTGTCAACAGAGATTGATATGCCAACAAATGGATGCAATTAGAAACCAGTAGCTTGACTAAGTTGCAGAACAACCCCATGTTATGCACGTGTAACTTTTATAGTCAAAATAATAATAATTGCAGCAGAATTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014270-'12-9,'12-8,14-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=0.459 C2=0.176
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PD(13.9=70.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCCATGCATTCACTTCT
R:
AGAGCCACTCCATTAGAAGAGGT
Band lengths:
257-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]