HsaEX0056648 @ hg19
Exon Skipping
Gene
ENSG00000144306 | SCRN3
Description
secernin 3 [Source:HGNC Symbol;Acc:30382]
Coordinates
chr2:175287613-175292592:+
Coord C1 exon
chr2:175287613-175287775
Coord A exon
chr2:175289203-175289377
Coord C2 exon
chr2:175292441-175292592
Length
175 bp
Sequences
Splice sites
3' ss Seq
ATAAAGACTCTTTTTTCTAGATC
3' ss Score
5.48
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
GAAATATAACTTTTGAAACAATGATGGAAATTCTTCGAGATAAACCAAGTGGCATTAATATGGAGGGAGAATTCCTGACCACTGCAAGCATGGTTTCTATTTTACCTCAAGACTCCAGCCTTCCTTGCATTCACTTCTTTACAGGGACTCCTGATCCTGAGAG
Seq A exon
ATCTGTTTTTAAGCCTTTCATATTTGTGCCACATATTTCACAACTATTGGATACCAGTTCACCAACATTTGAACTTGAAGATCTAGTTAAAAAGAAATCACATTTTAAGCCTGACAGAAGACACCCACTCTACCAAAAACATCAACAGGCATTGGAAGTAGTAAATAATAATGAG
Seq C2 exon
GAAAAAGCCAAAATAATGTTGGACAACATGAGGAAACTGGAGAAAGAACTATTCAGAGAGATGGAATCAATCCTTCAAAACAAGCATCTTGATGTGGAGAAAATTGTTAATCTCTTTCCTCAGTGTACAAAAGATGAAATTCAAATTTATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144306-'13-9,'13-8,15-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.136 C2=0.018
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PD(10.3=38.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAATTCCTGACCACTGC
R:
TGAATTTCATCTTTTGTACACTGAGG
Band lengths:
242-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)