MmuEX0041318 @ mm9
Exon Skipping
Gene
ENSMUSG00000008226 | Scrn3
Description
secernin 3 [Source:MGI Symbol;Acc:MGI:1921866]
Coordinates
chr2:73167820-73175875:+
Coord C1 exon
chr2:73167820-73167982
Coord A exon
chr2:73169040-73169214
Coord C2 exon
chr2:73173768-73175875
Length
175 bp
Sequences
Splice sites
3' ss Seq
ACAAAGTCCCTTTATTCTAGGTC
3' ss Score
7.3
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GAAACATAACTTTTGAAACGATGATGGAAATTCTTCGAGACAGACCCAGTGGCATCAACATGAAGGGAGAATTCCTGACCACGGCAAGCATGGTTTCTGTTTTACCTCAGGATCCCAGCCTTCCTTGCATTCACCTCTTTACTGCAACTCCGCACCCTGAGAG
Seq A exon
GTCTGTTTTTAAGCCTTTCATATTTGTACCACACATTTCACCACTGTTGGATACAAAATCACCAACATTTGAACCTGAAAGGCCAGTGGCAAAGAAGCCATATGTCAAGCCTGACAGAAGACACCCACTCTACCAAAAACATCAAGAGGCCTTGGAAATGATAAGTAACAGTAAG
Seq C2 exon
GAAAAAGGCAAGACAATATTGGACAAGATGAGGAAGCTGGAAAAAGCAGTATCTGAAGAGATAGAATCAATCCTCCAGAGTGGACATCTCGACGAGGAGAAAACTGTTAATCTCTTTCCTCAATATGTGAAAGATGAAATTAAAATTTATCAGTCAAATATTAGTTCTTAATGGTCATTTAAGTGGTCGAAAATCTTCCTCACTGCCCTGGTAATGATATAGAGCTATGCTAAGGAGATCTGATTATTTCCTCATAGTATTAGGTGGTATTTCGACTGATAAACCACAGTAATTAGTATTTGGTTGCATAAAGCATGAAACATAAACATGACGCATGGGCTATGCTATCATTCTGTATTATTAAGAAAGCTCAAGGCTTTCTTTTCCTTAAGCAGTGGAAAATATGTCAAGTGCATTGTTTGTGCTTTAGGCAAATAGTAACCAGCTTTAACAAGGCAGAGGTCTAGATTTACGCTGTTTGACATTGCCACACAGTCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008226-'14-14,'14-12,15-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.610 C2=0.071
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PD(8.0=36.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCCTTGCATTCACCTCT
R:
ACCAGGGCAGTGAGGAAGATT
Band lengths:
258-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: