MmuEX6089156 @ mm9
Exon Skipping
Gene
ENSMUSG00000020877 | Scrn2
Description
secernin 2 [Source:MGI Symbol;Acc:MGI:1343092]
Coordinates
chr11:96894378-96895272:+
Coord C1 exon
chr11:96894378-96894543
Coord A exon
chr11:96894633-96894813
Coord C2 exon
chr11:96894980-96895272
Length
181 bp
Sequences
Splice sites
3' ss Seq
TTCAACCTGTGTCTTATTAGGTC
3' ss Score
9.93
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GGAACATCACAGCAGAGGTGATGATGGGCATCCTCAGGGACAAGGAGAGCGGCATCTGCATGGACTCCGGAGGCTTCCGCACCACAGCCAGTATGGTATCGGTCCTGCCCCAGGATCCCACAAAGCCCTGTGTCCACTTCCTCACTGCCACCCCAGACCCATCCAG
Seq A exon
GTCGGTATTCAAGCCTTTCATCTTTGAAGTGGGGGTGTCCCAGTCCCCCCAGGTGTTGTCCCCCACTTTTGGAGCCCAGGACCCTGTTCGGATCCTCCCACGATTCCAGACTCGGGTGGACCGTCGGCACTCACTCTATCGTGGACACCAGGCAGCCCTGGGGCTGATGGAGGATGAGCAG
Seq C2 exon
GAGCAGGCACAGCAACTCCGGAAAAAGCAGCAGAGGCTGGAGCAGGAAGGCCTAGAGGCTCTCAGAGGGCTGCTTACGGGTGAACAGACCCCACCAGCCCAGGGCCTGGGCAGCCTCTTCCAGGCCTTTGTGGAGAGGGAAGAGCAGGCCTATGCTTAAGCATGCAGGAGCTCTGGGGCCGGCTGCCCTGAGCTGTGGTGGGTGCGGTGGTGGGGTTGAGTCACAGCCATCCCTTCACCCTGCTCATCCAGGTTTGGAGTGACTTAATAAATGTTTTATCTCCTTCTTCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020877-'11-7,'11-6,12-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.246 C2=0.577
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATGGTATCGGTCCTGCCC
R:
GAGCTCCTGCATGCTTAAGCA
Band lengths:
250-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: