BtaEX6088098 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001828 | SCRN2
Description
Bos taurus secernin 2 (SCRN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001205804]
Coordinates
chr19:39239631-39240647:+
Coord C1 exon
chr19:39239631-39239796
Coord A exon
chr19:39239889-39240069
Coord C2 exon
chr19:39240329-39240647
Length
181 bp
Sequences
Splice sites
3' ss Seq
TTCCATCCTTGTCCCACTAGGTC
3' ss Score
11.17
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GGGGTATCACAGCAGAGGTGATGATGGGCATCCTCAGGGACAAGGAGAGCGGCATCTGTATGGACTCTGGGGGCTTCCGCACCACGGCCAGCATGGTGTCTGTGCTGCCCCGGGACACCACCCAGCCCTGCGTGCACTTCCTCACTGCCACACCAGACCCATCCCG
Seq A exon
GTCTGTGTTCAAACCTTTCATCTTTGGGGTGGGGGCAGCCCAACCCCCCCAGGTGCTGTCTCCCACTTTTGGAGCACAGGACCCTGTTCGGACCCTGCCTCGATTCCAGACTCAGGTGGATCGCCGGCACCCTCTCTACCGTGGACACCAGGTGGCCCTGGGACTGATGGAGAGTGAGCAG
Seq C2 exon
GCTCGGGGGCAGCAGCTTCGGCAGAAGCAGCGGGACCTGGAGCAGGAAGGCCTGGTGGCTGTGCGGCGGCTGCTGACCAGGGAGTGTGCTCCACCCGCCCAGGAGCTGGGCGGCCTCTTCCAGGCCTTTGTGGAGAAGGAGACCCAGGCATATTCCTGAGCCTGACCCCTCCTGACTTGGCCTGGGGTGCAGGGGGCTGCAGTGGGCACAGGACCCCTGGGGTAGAGGCTAGAGAAATCCCCTCACCTCATCCCCCACCCCAGCCTTGTTCTGAGTGGCCAGGTTGGCCTTTGCTCTAATAAATGTGTTTTATTTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001828-'5-16,'5-11,7-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=0.344 C2=0.231
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PD(4.0=17.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGCATCTGTATGGACTCT
R:
TCTCCACAAAGGCCTGGAAGA
Band lengths:
255-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]