RnoEX6049361 @ rn6
Exon Skipping
Gene
ENSRNOG00000010214 | Scrn2
Description
secernin 2 [Source:RGD Symbol;Acc:1307741]
Coordinates
chr10:84970137-84971009:+
Coord C1 exon
chr10:84970137-84970302
Coord A exon
chr10:84970385-84970562
Coord C2 exon
chr10:84970746-84971009
Length
178 bp
Sequences
Splice sites
3' ss Seq
TTCAACCTGTGTCTTAATAGGTC
3' ss Score
10.57
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GGAGCATCACAGCAGAGGTGATGATGGACATCCTCAGGAACAAGGAGAGCGGCATCTGCATGGACTCTGGAGGCTTCCGTACCACAGCCAGTATGGTGTCAGTCCTGCCCCAGGATCCCACAAAGCCTTGTGTTCACTTCCTCACTGCCACACCAGACCCATCCAG
Seq A exon
GTCGGTATTCAAACCTTTCATCTTTGAAGTGGGGGTGTCCCAGCCCCCCCAGGTGTTGTCCCCCACTTTTGGAGCCCAGGACCCTGTTCGGATCCTCCCCAGATTCCAGACTCAGGTGGACCGTCGACATTCACTGTATCGTGGACACCAGGCAGCCCTGGGGCTGATGGACGAGCAG
Seq C2 exon
GAGCAGGCACAACTGCGGCAAGAGCAGCAGAGTCTGGAGCAGGAGGGCCTGGAGGCTCTCAGAGGACTGCTTACTGGTGAACAGACCCCAGCCCCCCAGGAGCTGGGCAGCCTCTTCCAGGCCTTTGTGGAGAGGGAGCACCAGGTCTATGCTTAAGCATTCTGCAGCTCTGGGGCCAGCTGCCCTCTGTGGTGGGCGCGCTGGGGGTGAATCAGCCATCCCTTCCCCCTGCTCATCTAGGTTCTGAGTGGATTAATAAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010214-'14-10,'14-6,15-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.200 C2=0.588
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PD(6.9=23.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTGCATGGACTCTGGAG
R:
TCTCCACAAAGGCCTGGAAGA
Band lengths:
248-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]