GgaEX1051251 @ galGal4
Exon Skipping
Gene
ENSGALG00000011945 | SCRN2
Description
secernin 2 [Source:HGNC Symbol;Acc:HGNC:30381]
Coordinates
chr27:3895545-3896597:+
Coord C1 exon
chr27:3895545-3895710
Coord A exon
chr27:3895785-3895962
Coord C2 exon
chr27:3896074-3896597
Length
178 bp
Sequences
Splice sites
3' ss Seq
TCCCTGCTGCTCTCCGCCAGGTC
3' ss Score
10.4
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
GACGCATCACAGCAGAGACGTTCATGGCCATCCTGCGGGATAAGGACAGCGGCATCTGCGTGGACTCGGAGGGTTTCCGCACAGCAGGCAGCATGGTGTCCGTGCTGCCCCAGGACCCTGCCTTGCCCTGCGTCCACTTCTTCACGGCCACCCCGGACCCCTCCAG
Seq A exon
GTCTGTCTTCAAGCCCTTCGTCTTCGTGCCTGGCCTTAAGCCTGCGCCACAGGTGAGTTCTCCCACCTTCAGCGACGACCCCGCCAAGAAGGTGCCACGCTTCCAGAGCACGGTCGATCGGAGGCACGAGCTCTACCGCCGGCACCAGGCAGCGCTGGAGCTGATGGAGAAGGACCAG
Seq C2 exon
GAGCGGGGCCAGGAGCTCCTGCAGACGCTGCGGGACCTGGAGAAGCAGGGCCTGGAGGCGGTGAATGCGCTGCTGGCGGGGAACGTGGCCCCAAAGCCAGAGGAGCTGGCCGAGCTCTTCTTCGACTGCGTGGACGCAGAGATGAAGTTTTACAAATAAACCCCGTGCAGGTGTGTTAGGAGGGGAGAGGAGCTGAGGTCGGGCTCCAGCTCAGATCCCACAGCGTTGTTCCCACCCGGGGGTGAGAAACCCTTCCTGGTGCCCTGCCCTGCTTCCTCGCCTCCTCTCCTTTTGGAGCTGTGGAGGGGAATGGTTCCACCAGCACCTTCAGCCCTGAGCAGTCAATCAGTGCTTGTGGGGGTGGCTGTGGTGCGGAAGGGGGCGCAGAGAAGGGGTGGGGTTCCCTTTCTCAGCTTGGCACGTTGTTTCCCTGCTCAGCCCCTCAGCAGAGGACGCAGCTGCTGGCTGCAGGGCTCCGTGTCAGACAGAGATCGATGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011945-'6-11,'6-7,7-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.317 C2=0.135
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PD(9.8=37.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATAAGGACAGCGGCATCTG
R:
CAGTCGAAGAAGAGCTCGGC
Band lengths:
257-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]