HsaEX6023334 @ hg19
Exon Skipping
Gene
ENSG00000141295 | SCRN2
Description
secernin 2 [Source:HGNC Symbol;Acc:30381]
Coordinates
chr17:45915049-45916062:-
Coord C1 exon
chr17:45915897-45916062
Coord A exon
chr17:45915636-45915816
Coord C2 exon
chr17:45915049-45915368
Length
181 bp
Sequences
Splice sites
3' ss Seq
TTCCATCTGTGCCCCTCTAGGTC
3' ss Score
11.89
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
GGGGCATCACGGCAGAGGTGATGATGGGCATCCTCAGAGACAAGGAGAGTGGTATCTGTATGGACTCGGGAGGCTTTCGCACCACGGCCAGCATGGTGTCTGTCCTGCCCCAGGATCCCACGCAGCCCTGCGTGCACTTTCTTACCGCCACGCCAGACCCATCCAG
Seq A exon
GTCTGTGTTCAAACCTTTCATCTTCGGGATGGGGGTGGCCCAGGCCCCCCAGGTGCTGTCCCCCACTTTTGGAGCACAAGACCCTGTTCGGACCCTGCCCCGATTCCAGACTCAGGTAGATCGTCGGCATACCCTCTACCGTGGACACCAGGCAGCCCTGGGGCTGATGGAGAGAGATCAG
Seq C2 exon
GATCGGGGGCAGCAGCTCCAGCAGAAACAGCAGGATCTGGAGCAGGAAGGCCTCGAGGCCACACAGGGGCTGCTGGCCGGCGAGTGGGCCCCACCCCTCTGGGAGCTGGGCAGCCTCTTCCAGGCCTTCGTGAAGAGGGAGAGCCAGGCTTATGCGTAAGCTTCATAGCTTCTGCTGGCCTGGGGTGGACCCAGGACCCCTGGGGCCTGGGTGCCCTGAGTGGTGGTAAAGTGGAGCAATCCCTTCACGCTCCTTGGCCATGTTCTGAGCGGCCAGCTTGGCCTTTGCCTTAATAAATGTGCTTTATTTTCTCTTCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141295-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=0.269 C2=0.356
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PD(4.0=66.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGTATGGACTCGGGAGGC
R:
TCTTCACGAAGGCCTGGAAGA
Band lengths:
249-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)