GgaEX6047940 @ galGal3
Exon Skipping
Gene
ENSGALG00000011945 | SCRN2
Description
NA
Coordinates
chrUn_random:36687519-36688433:-
Coord C1 exon
chrUn_random:36688264-36688433
Coord A exon
chrUn_random:36688012-36688189
Coord C2 exon
chrUn_random:36687519-36687900
Length
178 bp
Sequences
Splice sites
3' ss Seq
TCCCTGCTGCTCTCCGCCAGGTC
3' ss Score
10.4
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
GCAGGACGCATCACAGCAGAGACGTTCATGGCCATCCTGCGGGATAAGGACAGCGGCATCTGCGTGGACTCGGAGGGTTTCCGCACAGCAGGCAGCATGGTGTCCGTGCTGCCCCAGGACCCTGCCTTGCCCTGCGTCCACTTCTTCACGGCCACCCCGGACCCCTCCAG
Seq A exon
GTCTGTCTTCAAGCCCTTCGTCTTCGTGCCTGGCCTTAAGCCTGCGCCACAGGTGAGTTCTCCCACCTTCAGCGACGACCCCGCCAAGAAGGTGCCACGCTTCCAGAGCACGGTCGATCGGAGGCACGAGCTCTACCGCCGGCACCAGGCAGCGCTGGAGCTGATGGAGAAGGACCAG
Seq C2 exon
GAGCGGGGCCAGGAGCTCCTGCAGACGCTGCGGGACCTGGAGAAGCAGGGCCTGGAGGCGGTGAATGCGCTGCTGGCGGGGAACGTGGCCCCAAAGCCAGAGGAGCTGGCCGAGCTCTTCTTCGACTGCGTGGACGCAGAGATGAAGTTTTACAAATAAACCCCGTGCAGGTGTGTTAGGAGGGGAGAGGAGCTGAGGTCGGGCTCCAGCTCAGATCCCACAGCGTTGTTCCCACCCGGGGGTGAGAAACCCTTCCTGGTGCCCTGCCCTGCTTCCTCGCCTCCTCTCCTTTTGGAGCTGTGGAGGGGAATGGTTCCACCAGCACCTTCCGCCCTGAGCAGTCAATCAGTGCTTGTGGGGGTGGCTGTGGTGCGGAAGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011945-'0-3,'0-1,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.317 C2=0.135
Domain overlap (PFAM):
C1:
NO
A:
PF123253=TMF_TATA_bd=PU(58.1=60.0)
C2:
PF123253=TMF_TATA_bd=PD(38.7=45.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATAAGGACAGCGGCATCTG
R:
CAGTCGAAGAAGAGCTCGGC
Band lengths:
257-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]