BtaEX6088287 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002035 | ARL5C
Description
ADP-ribosylation factor-like 5C [Source:HGNC Symbol;Acc:HGNC:31111]
Coordinates
chr19:40321427-40323081:+
Coord C1 exon
chr19:40321427-40321507
Coord A exon
chr19:40322360-40322443
Coord C2 exon
chr19:40322992-40323081
Length
84 bp
Sequences
Splice sites
3' ss Seq
AACTTCCCTCTGCTGGCCAGTTC
3' ss Score
4.27
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
AAGACCCACTTCCTCATGTGGGACATAGGAGGACAGGAGTCTCTGAGCTCCACCTGGAGCACGTACTACTCCAACACTGAG
Seq A exon
TTCATCATCCTTGTGATTGACAGCACAGACCGGGACCGGCTGCTGACCACTCGAGAGGAGCTGTATAAGATGCTGGCCCATGAG
Seq C2 exon
GCTCTACACGATGCGCCCATCCTCATCTTTGCCAATAAGCAGGACATGAAGGACTCCATGACCATCGTGGAGATCTCCAGTTCCTCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002035-'3-4,'3-3,4-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(15.3=100)
A:
PF0002516=Arf=FE(15.9=100)
C2:
PF0002516=Arf=FE(17.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACCCACTTCCTCATGTGG
R:
GGGTGAGGAACTGGAGATCTC
Band lengths:
171-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]