HsaEX6022323 @ hg19
Exon Skipping
Gene
ENSG00000141748 | ARL5C
Description
ADP-ribosylation factor-like 5C [Source:HGNC Symbol;Acc:31111]
Coordinates
chr17:37316844-37319111:-
Coord C1 exon
chr17:37318964-37319111
Coord A exon
chr17:37317521-37317604
Coord C2 exon
chr17:37316844-37316995
Length
84 bp
Sequences
Splice sites
3' ss Seq
GGCTCCCCTCTGCTGCCCAGTTT
3' ss Score
2.71
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
CTTGACCAATGAGGTGGTCCATATGTGTCCCACCATTGGCAGCAACGTGGAGGAGATCATTCTGCCGAAGACCCACTTCTTCATGTGGGACATAGTGAGACCTGAGGCTCTGAGCTTTATCTGGAACACATACTACTCCAACACTGAG
Seq A exon
TTTATCATCCTTGTGATTGACAGCACGGACCGGGATCGGCTGCTGACCACTCGGGAGGAGCTATATAAAATGCTGGCCCATGAG
Seq C2 exon
GCTCTACAGGATGCTTCAGTCCTGATATTTGCCAATAAGCAGGACGTGAAGGACTCCATGAGGATGGTGGAGATCTCCCATTTCCTTACTCTCAGCACCATCAAAGACCACTCGTGGCATATACAAGGCTGCTGTGCCCTCACCAGGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141748-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF128032=G-7-MTase=FE(29.2=100),PF0002516=Arf=FE(27.8=100)
A:
PF128032=G-7-MTase=FE(16.1=100),PF0002516=Arf=FE(15.3=100)
C2:
PF128032=G-7-MTase=FE(29.8=100),PF0002516=Arf=FE(28.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCTGAGGCTCTGAGCTT
R:
ACGAGTGGTCTTTGATGGTGC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)