HsaEX6022323 @ hg38
Exon Skipping
Gene
ENSG00000141748 | ARL5C
Description
ADP ribosylation factor like GTPase 5C [Source:HGNC Symbol;Acc:HGNC:31111]
Coordinates
chr17:39155485-39165139:-
Coord C1 exon
chr17:39165079-39165139
Coord A exon
chr17:39161268-39161351
Coord C2 exon
chr17:39155485-39156795
Length
84 bp
Sequences
Splice sites
3' ss Seq
GGCTCCCCTCTGCTGCCCAGTTT
3' ss Score
2.71
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
AGCACACGGTCATCATCGTGGGACTGGACAATGAAGGAAAGACCACCATTCTCTACCGGTT
Seq A exon
TTTATCATCCTTGTGATTGACAGCACGGACCGGGATCGGCTGCTGACCACTCGGGAGGAGCTATATAAAATGCTGGCCCATGAG
Seq C2 exon
TGGGAGCAGTGGCTGCTATGGACAGTGAGATTGACACCATTCTCCCAACCCGTTGCTGAGAAGCTGGACTGCATACCTTGGATTCCTGCAGACAGCACAGCAGAAGAAGCTGCTCCTCACTCCATGGCCGCAGGCATCCTTCTTGGAGACGTCAGGGAAATGTTGGATATGTTGCAGATTTAGTGAGTGGAACTCTCTCCCTCTCCTCAGCCCTCAGTCTCTCCGTAGGAATAATGTGTGTGTGTGTTGGGGGGGCAGATTAAGAGACCCCTGAGGCTGGGCGCGGTGGTTTACGCCTATAATCCAGCACTTTGGGAGGCTGAGGCAAGAGGATCACTTGAGGTCAGGAGTTGGAGACCAGCATGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATATAAAAATTAGCTTGGTGGTGGTGCACGCCTGTAGTCCCAGCTACTCGGGTGGCTGAGGCAGAAGAATTGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141748_MULTIEX1-3/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF128032=G-7-MTase=FE(11.9=100),PF0002516=Arf=FE(11.4=100)
A:
PF128032=G-7-MTase=FE(16.1=100),PF0002516=Arf=FE(15.3=100)
C2:
NA
Main Skipping Isoform:
ENST00000269586fB9858
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGGACTGGACAATGAAGG
R:
ATGGAGTGAGGAGCAGCTTCT
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains