BtaEX6089337 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020359 | PLEKHM1
Description
pleckstrin homology domain containing, family M (with RUN domain) member 1 [Source:HGNC Symbol;Acc:HGNC:29017]
Coordinates
chr19:45719320-45721495:-
Coord C1 exon
chr19:45721429-45721495
Coord A exon
chr19:45720532-45720689
Coord C2 exon
chr19:45719320-45719800
Length
158 bp
Sequences
Splice sites
3' ss Seq
CCGGCACTTGCCCTCCACAGATC
3' ss Score
8.92
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
AAGGCTCAACCACAGGAATTATCTCTTGGAGTCGCCTCACAAGTACAGTGTCGCCGACCTCCAGCAG
Seq A exon
ATCGCGGACGGGGTGTACGAAGGCTTCCTCAAGGCCCTGATCGAGTTTGCCTCCCAGCACGTCTACCACTGTGACCTGTGCACCCAGCGCGGCTTCATTTGCCAGATCTGCCACCACCATGACATCATCTTTCCCTTTGAGTTTGACACCACAGTCAG
Seq C2 exon
GTGCAGCGAATGCAAGACCGTCTTCCACCAGACCTGCCAGGCCGTGGTCCAGAAGGGCTGCCCCCGCTGTGCCCGCAGGCGCAAATACCAGGAGCAGAACAGTCTCACCTAATCCCACCTCTTGTCCCCACCCGGGACCCGGGGCTCAGCCATCCCAGCCGGGTTGGCCACCAGCCTGGCCACACTCTCAAGGTGTCACAGAGCCAGGAAGACTCTCAGATGAGACCAGAGGACTGGCCTATGAGAGGGAGCCCCAGGAGCCCCTGATGACACCTCCTATCCCCCAACTATCTGCTCCAGGAGGCGCGGACACCAGCAGGTGCCCCCTGTCCGACGGTGTGGGAGGAGGGGGCCTTTGCACTAATCAGCCCAGCACCCCTCACTGACACCCCATCCCCATGAGGGCTGTTCAACACTGTGGAAACAAGACTTGGGGAGCATTTTCAATTCCACATTCCTGATTAAAAGGTCTAGTTTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020359-'17-22,'17-20,18-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=FE(10.5=100)
A:
PF139011=DUF4206=FE(24.9=100)
C2:
PF139011=DUF4206=PD(14.4=78.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTCGCCTCACAAGTACA
R:
TGGCTCTGTGACACCTTGAGA
Band lengths:
247-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]