DreEX0056313 @ danRer10
Exon Skipping
Gene
ENSDARG00000099954 | plekhm1
Description
pleckstrin homology domain containing, family M (with RUN domain) member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2752]
Coordinates
chr12:4919491-4927925:+
Coord C1 exon
chr12:4919491-4919554
Coord A exon
chr12:4922100-4922257
Coord C2 exon
chr12:4925140-4927925
Length
158 bp
Sequences
Splice sites
3' ss Seq
ATTATTATTTTTGCACACAGATA
3' ss Score
7
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ACTTCAGCAGAGGACATACTTGTTGGATAACAGTGACGTCTACAGTGTGTTAGACTTGCAGCAG
Seq A exon
ATAGCAGACGGCCACTACGAGTCTTACCTGCAGTCTCTAATTCAGTTTGGCTCCAAGCATGTGCACAACTGTGACCTTTGCACTCAGAGAGGCTTTATATGTCAGATCTGCAATGCCCCCGACATCATCTTCCCTTTCCAGTTTGACGTAACTTCCAG
Seq C2 exon
GTGTAACGTCTGCAAGACCGTCTTTCATTCCTCCTGTAGGGCTCAGTGTCCGGTGTGTCCACGCTGCATCCGGAAACAAAAATACCTGGAGAGAGACTTGGAGGAATCTTAGCTGTAAAATAAAAACATGAACGATTGCTACAGAGCTTAAAATACAGGGTTAGTATCAGATGTTATACTTCATATAAAGGGTTCAGTTCACCCAAAAATGTAAATGTGTTCATCGCTTACTCAGATTACGGTTACAGTCGCGATACTGGAATTCGGTACCAAACTGAAATTTTAAAAACGTCCATTTCCCACTAACATTTCAGCGGAGAAAGTTCTAAAACACTGCTGATTTGCCATTGTGTTAACATGCTCAACAGAAATGACTGTGATTGGCCGTGAAGGTCATCAGTTCACCGAACTCACTGCTGTTTACAGCATGTAAACACAGATACAGGGACAGTGGAGTGTTTCAAAGTCACGTCGATCAGCTGTATTGTCTGTAAGCTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099954_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=FE(10.3=100)
A:
PF139011=DUF4206=FE(25.5=100)
C2:
PF139011=DUF4206=PD(14.2=76.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTGTTAGACTTGCAGCA
R:
TCTGAGTAAGCGATGAACACA
Band lengths:
258-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]